Software repositories

CyTOF: documentation and repositories

CyTOF analysis is performed by a script written by Lev Petrov in R language. Documentation for this workflow can be found here. Coming soon.

IMC: documentation and repositories

IMC analysis is performed by a set of programs including scripts based on the adapted SPECTRE package written in R language. Documentation for this workflow can be found here. Coming soon.

We also set up an email discussion list at the BIH/Charité for people involved in multiplex tissue imaging: You can sign up to the Spatial Multiplex bulletin board here.